NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257021_1012771

Scaffold Ga0257021_1012771


Overview

Basic Information
Taxon OID3300023500 Open in IMG/M
Scaffold IDGa0257021_1012771 Open in IMG/M
Source Dataset NameMarine microbial mat from Loihi Seamount, Hawaii, USA - Marker 39_BS4 Individual Assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterWestern Washington University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2117
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine → Marine Microbial Mats From Loihi Seamount, Hawaii, Usa

Source Dataset Sampling Location
Location NameLoihi Seamount, Hawaii, USA
CoordinatesLat. (o)18.902Long. (o)-155.257Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006550Metagenome / Metatranscriptome370N
F060053Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0257021_10127711F006550GAGGMQAKINKREIDYKGQQLWLNPVDKTVYATDGAPTYSFGEVNGTPIYNYDSHFDAVKTAKDKLGTSYYHDAFVDPEFKSLAEDYVSDVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAGKNLAKEIAVPNLLISIDTVTKFTGMEKLDEGMRARVKELPYTRATFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQAAIAAWDTFVSATTQSTGDPTIDIGIASLNIEGSGVGGRLNRVGMHQLTFAKFTGNTFLRGVASIGPRDYNYEPGTTDLVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQAETGRLITGAITPIDWS
Ga0257021_10127712F060053GGAGMAFGLIPAGTITRETIISTRRIPIAGTTTITKGNVCELSGGYLANSPTGVNADVNHFVALETIDNSGGSAGDLSAPVAVSGHYVTVVADAAIRPGARVQVSASTAGQVITAAGDIDQQIGWYTGKEGGTISKASGTPFQETFTDDSDFPPVVCADGDIIEIYLGL
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