Scaffold Ga0257021_1032112

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0257021_1032112

Scaffold Ga0257021_1032112

Overview

Basic Information
Taxon OID	3300023500 Open in IMG/M
Scaffold ID	Ga0257021_1032112 Open in IMG/M
Source Dataset Name	Marine microbial mat from Loihi Seamount, Hawaii, USA - Marker 39_BS4 Individual Assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Western Washington University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1243
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine → Marine Microbial Mats From Loihi Seamount, Hawaii, Usa

Source Dataset Sampling Location
Location Name	Loihi Seamount, Hawaii, USA
Coordinates	Lat. (^o)	18.902	Long. (^o)	-155.257	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010791	Metagenome / Metatranscriptome	299	N
F026902	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257021_10321121	F010791	GAG	MSFEFRAGRKRVVKSVETVEEANELMRSMIAIRNENSLWENIDVKTGHLRAVDELEKLVGTIFDVFETMSIYVNGKSVRRIWSRGF
Ga0257021_10321123	F026902	N/A	MDRYRIEYAEKGIPGILCKYVTGTEELLSVLLKLKYFDKLKSFDNVKIYLKKT

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