Scaffold Ga0257021_1085480

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0257021_1085480

Scaffold Ga0257021_1085480

Overview

Basic Information
Taxon OID	3300023500 Open in IMG/M
Scaffold ID	Ga0257021_1085480 Open in IMG/M
Source Dataset Name	Marine microbial mat from Loihi Seamount, Hawaii, USA - Marker 39_BS4 Individual Assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Western Washington University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	741
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine → Marine Microbial Mats From Loihi Seamount, Hawaii, Usa

Source Dataset Sampling Location
Location Name	Loihi Seamount, Hawaii, USA
Coordinates	Lat. (^o)	18.902	Long. (^o)	-155.257	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013649	Metagenome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257021_10854801	F013649	N/A	MSSILEKKLSILERLPSSRRMREHDEAGKTSKKHPKKKHHYDEHFNKDWDKDLWD

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.