NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222686_1006769

Scaffold Ga0222686_1006769


Overview

Basic Information
Taxon OID3300023501 Open in IMG/M
Scaffold IDGa0222686_1006769 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1957
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014582Metagenome261Y
F061424Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0222686_10067692F014582N/AMSASIIINANNITDSVTNSVFQVDFERAVNLVDKHISLTSASLYFSWRNITTSNNKFSYTWIDDIVYNVEIPIGLYEISDIRSYFQFVMSQNNHVMTNTETGSTIYFIDFVVSNTNYSIDILTYPVPASLPTGYTSSITFIGTEKNPRLTLPAGINAIFGYVEDFTTDAGSSILTFNSSVAPNVSPDNSVLIVCDQVLNEFSNLGILYALSPSVGIGSLIVDKPAYPIYSKLRNGSYNHLTFRVLSSKTFRPIELIDPEINFIFSIK
Ga0222686_10067694F061424N/AMFHKARTELERQKIFDDYLLGLLKDKKVIQTNQKIIDESGFSYDPELENNQIKGTFDSYVDTLVIKNYMIEQLQSRLKISKSLSTSFVNKLNGNELLILSKNLNEFIKYLEETYNNINDYILK
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