NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222686_1024029

Scaffold Ga0222686_1024029


Overview

Basic Information
Taxon OID3300023501 Open in IMG/M
Scaffold IDGa0222686_1024029 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)887
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104506Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0222686_10240291F104506N/ARSLSSRTIKIKYMSGIKTEAWGDDRITFNTCTGYNQLYEDTLIESKSPLKKTVLKFFEEANYLVKDPLVLLYTNEELVKIYKEDTPNWYDYNAIETINSQQFENIAHTKFKNGEEGWLTTQDILSARKYVYDSHFKPNVSESDKATIWNTDNENTLIMVHEASNNPQSFETILAKDNNWEFFPYIEEPSRRWDIKFSDEARKSIFGQFQTLRFDNNTMRIHMLLKTIYNTKYHKSIISSKGKGKNVYYEGVKDDALDMVVEVAKNGLNEQAGKCLIQDEPA
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