NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222686_1032448

Scaffold Ga0222686_1032448


Overview

Basic Information
Taxon OID3300023501 Open in IMG/M
Scaffold IDGa0222686_1032448 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)736
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010055Metagenome309Y
F032039Metagenome181N

Sequences

Protein IDFamilyRBSSequence
Ga0222686_10324481F010055N/AMENFYTKKEVKKYCIQGENPNYHLHNFDVPFRALVIAPSGSGKSNFLTNLITLFCKGTEGTFDNIYIFCKSRDEPLYQYLSDKSKGLIDVHENLDKLPAINELNNCKQTLIIFDDMVTDLKKHPIISEYFIRG
Ga0222686_10324482F032039N/AYSDVDKLDENEKNHLYNIGKKMHITELFEIPSTLKNQEEKLKDEFFKLRGSIMAGNNSPEILKKFKMILIKMKNNKMISLAEFNEILNIFLEMDY
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