NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228704_108482

Scaffold Ga0228704_108482


Overview

Basic Information
Taxon OID3300023691 Open in IMG/M
Scaffold IDGa0228704_108482 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17_Aug_MT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)799
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9406Long. (o)-83.5607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026808Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0228704_1084821F026808N/ARLINTHITHTHLLIHSRSFCLVMVNRGGKRKSGGARRSSGGPRAPSFVFEPGEQRLRLDDLFQSATIEEGEVEGTVELGGLTFPPSSARVLGWTITVSAVHGDVQFRTGLGHAKTARVVVPCPFPRPAAVSAPEVNFFGPEAATFGVFGSVTVYFKSQ

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