NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228680_1018061

Scaffold Ga0228680_1018061


Overview

Basic Information
Taxon OID3300023695 Open in IMG/M
Scaffold IDGa0228680_1018061 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 21R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)796
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium catenella(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073446Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0228680_10180611F073446N/ASMVRDDTSLKPLSVADQLEQILKENGPTMEVTALCSKFIQKFHVSVANVVQMRPLDFIMREKAKFALVGNNMVTLKEFEKAEKAKVEGSALRMARSRSPQTSRPAPTPAPWKQQEKPMRRSPSPRARPTTQQIDQNEDLYQELHTKISSRSFNSRVAQALSSIKEIVEQHCFLNVVDVVKGGSVGKGTAITDCEDAELVFFVKGLPTEGHQKWMVPLLRSVKATLSLKLASDLLTSMECTDDSVRMDVKGGLVVNVRFSPAFENY
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