Basic Information | |
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Taxon OID | 3300024049 Open in IMG/M |
Scaffold ID | Ga0233359_1018251 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-P30 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 776 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 40.5253 | Long. (o) | -123.5031 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006766 | Metagenome / Metatranscriptome | 365 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0233359_10182512 | F006766 | GAGG | MYTGTLINDLMATVERAERGAFQKQIVDEMELVRMFDLQVPQMHGEPVFAGAA |
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