NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247686_1000033

Scaffold Ga0247686_1000033


Overview

Basic Information
Taxon OID3300024177 Open in IMG/M
Scaffold IDGa0247686_1000033 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK27
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29557
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (61.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008640Metagenome330Y
F049747Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0247686_10000332F049747GGAGGVELRARVPRYQRDMLRELARREGTPVDAVLTRELEGVASAHAEELAGVPGLAMAMRWPETEVTG
Ga0247686_10000334F008640AGGAGMDESTRSRIRHIFLSPRPNFALMTAADLLGFTLKELKREIEDGAIVAVWTALGERMTREELVAVAMQTLEQSVIEDALGKDAPSVLPEAIRLVELRARVPRYQRDVLRALARREGTSVDAVLTRELEDVVSAHAEELAGVPGLAMAMRWPETDLGLDRRVAPRAQPSPE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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