NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247694_1000004

Scaffold Ga0247694_1000004


Overview

Basic Information
Taxon OID3300024178 Open in IMG/M
Scaffold IDGa0247694_1000004 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)144842
Total Scaffold Genes114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)91 (79.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045397Metagenome / Metatranscriptome153Y
F103195Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0247694_100000461F045397GGAGGMIHPARPKTLSALLALAFAAAILFALKSTAQEGKPPALPLQEMQKLSKLYVGSWTFTETYPKSSMAPNGGENTGIYTSELGPGGNSIFNHFHSKGPVGEFDGTVVMTWDPKEKLYKAYIFGDSFPSAVVETGQWENDALVYRFELAMGPTKIALRNVTKFLPDGKLTSEEFSSVNGAPETLFVHVAATKK
Ga0247694_100000465F103195GAGGMLGQSEHEEDSDRECQGKAPNELPCNLAATVHCIQCDLWFCDIHAEDEQWHECMKTMN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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