NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247695_1004907

Scaffold Ga0247695_1004907


Overview

Basic Information
Taxon OID3300024179 Open in IMG/M
Scaffold IDGa0247695_1004907 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1925
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004612Metagenome / Metatranscriptome431Y
F028519Metagenome191Y
F053535Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0247695_10049072F004612N/AMQSLIVKISNPDTVHAIAQAAKRQGTTPEVAALELLETAVLAQKPFEEIVDPIARSFDESGMSETELDDLVKQTQRTIREERRRNK
Ga0247695_10049074F053535GGAGGMGKRITEYPHTISFRVTDEAWLSIQKQIANSDVTAHEWCRKAALDRLNNDYALSKAERLLLEHFVRAQYLVTQGFQLLADDNLTGDQWKKLRAIATERAAELTDNALALRAQRSRERS
Ga0247695_10049075F028519GGAGMEDKPKTFTWEWEDAATGLIRTIKIPMPDLDRDYDPSKSREIILDRKLRLDNVEMPDWIEIIPPRKPN
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