NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247695_1032224

Scaffold Ga0247695_1032224


Overview

Basic Information
Taxon OID3300024179 Open in IMG/M
Scaffold IDGa0247695_1032224 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)747
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp.(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016552Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0247695_10322241F016552N/AAHAQGTRKDDIVFNTRGIPLAGATVRVCAMPASGQPCTPLALIYSDIGLTQALSNPTTTDGLGNYSFYAAPGKYEIEISGPGISTKQLPNVVLPNDPASPTFSGAVSAFSLSLGGNLTVSGNTTVLGSLASGTLTLNNQGTPPGAPGTGTVNLYTKTTDKRLYYQDETGTEIGPLGPGNGAQTNVSNTFTAAQNIDADFHTKGPNPSYDIMRFGGYEYTGTQPSTTGTIGAGSTSLTLASAQDFANGQ
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Institute for Fundamental Biomedical Research
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