NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228668_1003504

Scaffold Ga0228668_1003504


Overview

Basic Information
Taxon OID3300024180 Open in IMG/M
Scaffold IDGa0228668_1003504 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 82D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4513
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045101Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0228668_10035044F045101N/AMRVACYLLKTHHYKNMKLPKIKLPSSKLPIINYIKRYWILLLVITVLIWAYTSGALALTMRGALLIPIFTLIAGASGLLLRNVYNRKTTDKYVDDKDLIKNDWNSLTPFQRIVITKVEFLAYFAGGCLIAAGLVIIINV
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