Basic Information | |
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Taxon OID | 3300024182 Open in IMG/M |
Scaffold ID | Ga0247669_1000181 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 31395 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (80.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Indiana | |||||||
Coordinates | Lat. (o) | 40.4449 | Long. (o) | -87.0297 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005371 | Metagenome / Metatranscriptome | 403 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0247669_10001819 | F005371 | GAG | LRVVTLGVLLGASSAVVAQNSAPRTHAADASVLDAREIVTRSIAAAERSWQARGHYIYMERDEDRRLNAAGQVESQNVDVARMTVVNGARFEQVLEHNGQPPTAKDQRKNDDDLEKLKHESSAEQTARINRDYENRSFLAEMLQAFDFQLAGEDITDGRPAYVLLATPHPGYRAKGKYGKMLSKVEGKLWVDKQDFGWIKVDGRVTQSFSIGLFAARVQRGSHILLRQNCVGDAVWVPTRLEIRASARILFLKNLEMYRILTYSDYHLATDGPYSVSR |
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