NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228669_1002761

Scaffold Ga0228669_1002761


Overview

Basic Information
Taxon OID3300024185 Open in IMG/M
Scaffold IDGa0228669_1002761 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 84D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5795
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015096Metagenome / Metatranscriptome257Y
F018173Metagenome / Metatranscriptome236N

Sequences

Protein IDFamilyRBSSequence
Ga0228669_10027611F018173N/AMAIIYSYPYDQTITDTDAWVGTDSVNRQTKQYTAKAVADYLNINGKVAIAGQMNYQFVQDPSFKAGTFAFAAGSGDDTPWSSITSIVISNMDLSGQIVSPFLEYLVDEQVLFQDVAGKGSFGHYIMRGYTQIGTTNFYTLTLEYLGGNGSIDIDHYYTLVNFYLELGATGVDSVRALDTEFIDMTPTTPQTGNVEVTASLSATGT
Ga0228669_100276117F015096GAGVHLYINHKDEDNMNTLTQWQARQKELEDKYVELMLAKYPLLTDVTTNTQRENGTRTFQLNHKKYGLCKFATYKSGMVRKIIRTRFKDLSCYQLNPQRSITNYYMTLSDNSELNMSSYVGKQRVKITNGLARLVYLEKYLIKNYDLNSVQDVIEVDGVLYKRI
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