NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228669_1056325

Scaffold Ga0228669_1056325


Overview

Basic Information
Taxon OID3300024185 Open in IMG/M
Scaffold IDGa0228669_1056325 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 84D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)794
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006870Metagenome / Metatranscriptome363Y
F007087Metagenome / Metatranscriptome358N

Sequences

Protein IDFamilyRBSSequence
Ga0228669_10563251F006870N/AMKKISLIFLLTLSLVLTSKASSLETKLSPQGSDKYNFLIKGDPKTSEKKLRDVFQNKVNEVCGTRFEIINIKTDYINNEGPKNNI
Ga0228669_10563252F007087AGGMKKLLLIALIIPNFVLADEIKLVCEGEESNYRNDVLENTSKASLTLQVKNDSIVIDSMTYKSKTFDYGAIKGESKYTKEDAQVILETSQVSNECDTALLKVKLNRSNGMIESTAKRIGACDGSSFTTSTKFKGKCK
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