NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247665_1017536

Scaffold Ga0247665_1017536


Overview

Basic Information
Taxon OID3300024219 Open in IMG/M
Scaffold IDGa0247665_1017536 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK06
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)867
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002770Metagenome / Metatranscriptome531Y
F004064Metagenome455Y

Sequences

Protein IDFamilyRBSSequence
Ga0247665_10175361F002770GGAGLKITSIRHFRAFSLIVLLILLVSLAYGSEGRPAVVRIVRNDAWNDFVGQIKFLPDDSPQDSFDKELLVVQKFLKAHETEVSVGVYDLEVFKAIDQARARLQKADRDL
Ga0247665_10175362F004064N/AMRGAFVVQLGPETRPTKGQFEGWVEEVDSGEELRFRSGQELLAFLGQRFGLVLASADKARADHKSELGPLGKKRTRKGSTS

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