NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224568_1003673

Scaffold Ga0224568_1003673


Overview

Basic Information
Taxon OID3300024220 Open in IMG/M
Scaffold IDGa0224568_1003673 Open in IMG/M
Source Dataset NameSpruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1524
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae → unclassified Mimiviridae → Terrestrivirus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0448Long. (o)13.618Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061612Metagenome / Metatranscriptome131Y
F074512Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0224568_10036732F074512AGAAGMNAILTISALIGATLIVVRGTILSPVRKLWPALLECSQCTGTWVGLVAGASGVVSIGRGRVIDAIVVGAATSFLALVADAILLKLLGDPSEEKR
Ga0224568_10036733F061612AGGAGGMANVIHEEQICCGYKRCPVVRILDDGSVELTDDDTEAGSVGTIRLRPAAAAHLVEVLSQKRTTNV

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