NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247691_1000067

Scaffold Ga0247691_1000067


Overview

Basic Information
Taxon OID3300024222 Open in IMG/M
Scaffold IDGa0247691_1000067 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK32
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36354
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (92.68%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102324Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0247691_10000672F102324AGGAGGMGAPNLTTHLPILQAMEKANTTPFTSAQPEKASQTFAFGTPVQLSAGGFVQAWDGATVAAGILGVAESFGQNLATDGAGAPTPPLGGITGNISISTYGSVPNQPSGVNIPIGAPVADGRTLYMEPNQDNIFEAMFDNSNGTVAANYTPTQADIGVAYGLTKDSVGPYWYVDKNKTGGSAVLQIVGIGPDGFVLNGRVRFVFLTAAIQVA
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