NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247691_1002104

Scaffold Ga0247691_1002104


Overview

Basic Information
Taxon OID3300024222 Open in IMG/M
Scaffold IDGa0247691_1002104 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK32
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3775
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000807Metagenome / Metatranscriptome883Y
F052149Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0247691_10021043F052149GGAGGMACKSCASEKQQGFSGEMSVAFQPIKKLKQAPVYFIQKILVCLDCGCVDLTVPSAELEQLREGV
Ga0247691_10021044F000807GAGMNCKSCGSDKQSRFTGEIGIHFPGLKNIDKPVVWVFPELVVCLECGTAEFAVPDMELRLLAKGDAASRLTRT

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