NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247691_1030488

Scaffold Ga0247691_1030488


Overview

Basic Information
Taxon OID3300024222 Open in IMG/M
Scaffold IDGa0247691_1030488 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK32
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)828
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014046Metagenome / Metatranscriptome266Y
F095967Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0247691_10304881F014046N/AFIACYDLLGPLAALRVRQIITRYSPELADRAAYHSSELKLSTAPDPLTGTG
Ga0247691_10304882F095967GGAGGVRAVVMVLRVRSRQYWKSWLALSLLVAVAGGFVLTTASAGHRTSHAFPEYAARHGYDVIVYSGHRVPQLSRLPHVTSVTPALVTYNGAVGCVSCRKPIDTRDFLVNEVPPGQLPRMMTLLSGRMPRQSDPGEVLASFTLARDNGVRIGSVLRPQLGTEADLEGATVKPSQALRPALRVVGIVVTEGEFPSG
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