Scaffold Ga0247673_1000476

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247673_1000476

Scaffold Ga0247673_1000476

Overview

Basic Information
Taxon OID	3300024224 Open in IMG/M
Scaffold ID	Ga0247673_1000476 Open in IMG/M
Source Dataset Name	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK14
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4781
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Thalassobius → Thalassobius litoralis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	40.4449	Long. (^o)	-87.0297	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083339	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247673_10004765	F083339	GGGGG	MASYQQLQDDVQGWLNRRDIASMIPGWILMVETEIAETLRARCMVVSGTQPIDAAYITLPPDFAQMESIRDATSGELFILKDEWSGHWTAPESSSWRDGAVVGAVGQVCTAYRLVHDCIEFLPHPVIPDPPDPAWLPQQVLMGYYARPRPLVLPYDTNPVLEQLYGVYLFGLMKMGAMYELDDDRAAQADAQFQQVVTRANLWKQQSDYGGAPLRSELATTF

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