Scaffold Ga0224572_1000858

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0224572_1000858

Scaffold Ga0224572_1000858

Overview

Basic Information
Taxon OID	3300024225 Open in IMG/M
Scaffold ID	Ga0224572_1000858 Open in IMG/M
Source Dataset Name	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4078
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.0448	Long. (^o)	13.618	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000838	Metagenome / Metatranscriptome	866	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224572_10008584	F000838	AGCAG	MSWPAQSGVLKPGVLKQRRAARIRIMPGRAIRVTSRIVFFICGAASLLTCAPYVILQGVALPVQSEWVIFVIALALVGVFNLAVAVLPRSWIAKACKKDRDDVRLFSAPLKMLGAFAAIAYPVALVAYFAPHSWNLDPQLMFALCPMYLLKMNFDPSPALTLFLLAPMNAAVYGALGSTFAYAWLAFRKRTSR

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