Basic Information | |
---|---|
Taxon OID | 3300024225 Open in IMG/M |
Scaffold ID | Ga0224572_1001122 Open in IMG/M |
Source Dataset Name | Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3789 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Czech Republic: South Bohemian Region | |||||||
Coordinates | Lat. (o) | 49.0448 | Long. (o) | 13.618 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F066968 | Metagenome / Metatranscriptome | 126 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0224572_10011224 | F066968 | AGGA | MPKRQFESRRAVARCLLLAKTIYLFRCGESGLYAFTADPSGRVLPSRIYPQIRWRFERCVTLRPDKNSPKHKMASKIIDAIAEHGFHLTHAAVNAEHCTIL |
⦗Top⦘ |