NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0228598_1006514

Scaffold Ga0228598_1006514


Overview

Basic Information
Taxon OID3300024227 Open in IMG/M
Scaffold IDGa0228598_1006514 Open in IMG/M
Source Dataset NameSpruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2414
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0427Long. (o)13.6161Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001485Metagenome / Metatranscriptome686Y
F017614Metagenome / Metatranscriptome239Y
F070419Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0228598_10065141F070419GAGMKRSLQQIAEAVEARLQGDGSVKVGGVASIGSASEHDLVFVE
Ga0228598_10065142F001485GGAMLGLLADFLLPIWWGLAATIPILFISWWVAYRSDWF
Ga0228598_10065144F017614GGAGMYLQPVLRCKNPDCPLPSAARIRLPYLNPPQTGGNPPSWPQDGWQLRLICRECDHWYIYEKKDVEWAPYTRPLEDETRLTFLCADLECGEPDCKSRTQWHVLDNSQMSESELLEFVLRADPVAVCENGHPFSISGTASSSAQKVSSL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.