NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228598_1030275

Scaffold Ga0228598_1030275


Overview

Basic Information
Taxon OID3300024227 Open in IMG/M
Scaffold IDGa0228598_1030275 Open in IMG/M
Source Dataset NameSpruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1065
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0427Long. (o)13.6161Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019185Metagenome231Y
F057634Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0228598_10302751F057634GAGMNLMLIVAVLAISAVPMYAEAQKPSAVKLKADAQNVVKIISGDKLKTQTYCEIAELNDQIDQEEDPAEAEKLSRTRDQLERQLGPEYVALVRGLKDIDPNSQGGQEAGSILEELDKLCGA
Ga0228598_10302752F019185N/AGTFGKRLVRIIGVAVMPFAFAGLVLSLNHHRSVQGQGPITNNAPSISTNNQSGGTDALNAIGPQRLVFDATIGNQLASKLPTGKSIEIMAVGSRTDWNIADQYAQYLKAKGFDVSFLRTGEVVPPPDRKITIRDDPTTSPIVVIIAPSAL
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