NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228633_1149153

Scaffold Ga0228633_1149153


Overview

Basic Information
Taxon OID3300024228 Open in IMG/M
Scaffold IDGa0228633_1149153 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 41D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)519
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072835Metagenome / Metatranscriptome121Y
F085330Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0228633_11491531F085330AGGAMKTLYEILNVDLAQEYTKARKLAKLATLDAGDLTAEVETAINEMDIPNDDDRLHWIQKLGRAAGADLLTLGKVQPENMIKMASLSADDFQECVKVATGSARDWN
Ga0228633_11491532F072835N/AIGFVMALPATGSTISMSDIRNYFVGGGFSSSYTISVLGTYIGVSASTTISMSSTFGGYYFPILP

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