NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233399_1018035

Scaffold Ga0233399_1018035


Overview

Basic Information
Taxon OID3300024231 Open in IMG/M
Scaffold IDGa0233399_1018035 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 43D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2186
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036922Metagenome / Metatranscriptome169N
F037941Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0233399_10180352F036922GAGGMAVAIGEALYPALFEPKVDKYTPKPGVYSIDLKVTDEERDRLIASGIKPKQKDANVFVFKRKPITAKGNHMPAPTVVDENKHGWDSTIKIGNGSQVKVAYSTYEHQATEQFGLGKSLDAVQVVNLVEYTGGGNALDEFDAVTKEDVPF
Ga0233399_10180353F037941AGGAGVRCRACNKQLNDNESVYKDSETGEYLDMCNICIRKSYASFDLEGDDDRKYVETLFTKIQ
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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