NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0228655_1005906

Scaffold Ga0228655_1005906


Overview

Basic Information
Taxon OID3300024236 Open in IMG/M
Scaffold IDGa0228655_1005906 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 67D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3375
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008384Metagenome334Y
F092935Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0228655_10059063F092935N/AMKSTTKERKDSHMNSLILERKTAFANLVRAYLKFNVSDALNIVVEKDGNISINGNYYKFDVSDYTGCTENYIFYNPSSGRLLIQKNDVKKIYKLDVNLYDESVN
Ga0228655_10059069F008384N/ALKKNTRYNKELVEQEAQLSIEQDAITNELGKFIYQRCIEISGSAFFTNGDDELKQALIDEAVMRVCEKFLHYYKEGGSAANLIITMIYSTMTNKIVGLKWKDKYGQRIKGKVVCIENGEKFTRLV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.