NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228653_1000861

Scaffold Ga0228653_1000861


Overview

Basic Information
Taxon OID3300024237 Open in IMG/M
Scaffold IDGa0228653_1000861 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 65D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9061
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045050Metagenome / Metatranscriptome153Y
F046235Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0228653_100086115F045050N/AKKMKYIFTLLALTVASTAWASENNQAMKACLDEYGYDRTAPIEERMAFDFKGPAKCHAQYRNAVMLAERAELKDFLKHNPRYRVPGQSLNRCWGKPRVMPFESAYIKQTAGGFEAGVSYKDTLPAGCYENAPWDNRDAVQKN
Ga0228653_10008618F046235GAGMQIHEYYDWNNLIDVSARNAMCDDINNVIADGHYWKNSPPYQTDINIFGLPHDHWINLKMSFIWSCFAFMGREAQIKSVKSWGYKTNLATQEDRNTYWHQHLREGSQVVSGVYYLNVPDENVDLSQSGTELAPNGVEQGGKYYAEMRVGNWIIFPGNTWHRPGILTSTNNRYIVAADMEI
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