Basic Information | |
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Taxon OID | 3300024237 Open in IMG/M |
Scaffold ID | Ga0228653_1000861 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Monterey Bay, California, United States - 65D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9061 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (73.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 36.8313 | Long. (o) | -121.9047 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F045050 | Metagenome / Metatranscriptome | 153 | Y |
F046235 | Metagenome / Metatranscriptome | 151 | N |
Protein ID | Family | RBS | Sequence |
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Ga0228653_100086115 | F045050 | N/A | KKMKYIFTLLALTVASTAWASENNQAMKACLDEYGYDRTAPIEERMAFDFKGPAKCHAQYRNAVMLAERAELKDFLKHNPRYRVPGQSLNRCWGKPRVMPFESAYIKQTAGGFEAGVSYKDTLPAGCYENAPWDNRDAVQKN |
Ga0228653_10008618 | F046235 | GAG | MQIHEYYDWNNLIDVSARNAMCDDINNVIADGHYWKNSPPYQTDINIFGLPHDHWINLKMSFIWSCFAFMGREAQIKSVKSWGYKTNLATQEDRNTYWHQHLREGSQVVSGVYYLNVPDENVDLSQSGTELAPNGVEQGGKYYAEMRVGNWIIFPGNTWHRPGILTSTNNRYIVAADMEI |
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