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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024239 Open in IMG/M |
| Scaffold ID | Ga0247724_1001072 Open in IMG/M |
| Source Dataset Name | Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5526 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (6.67%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.7 | Long. (o) | -98.594 | Alt. (m) | Depth (m) | 3933 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026798 | Metagenome / Metatranscriptome | 196 | N |
| F038078 | Metagenome / Metatranscriptome | 166 | N |
| F039102 | Metagenome / Metatranscriptome | 164 | N |
| F045533 | Metagenome / Metatranscriptome | 152 | N |
| F045559 | Metagenome / Metatranscriptome | 152 | N |
| F055422 | Metagenome / Metatranscriptome | 138 | N |
| F057099 | Metagenome / Metatranscriptome | 136 | N |
| F062460 | Metagenome / Metatranscriptome | 130 | N |
| F073066 | Metagenome / Metatranscriptome | 120 | N |
| F085120 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247724_10010721 | F055422 | N/A | MNNWRFRRRTFPLTRREAHSRVEAIPIANIDILLRSIIDVMNEIRPTDDFDAILATRLYYAVMCLKRFFPEWGISMQPHHLRNASPPNRDRNPPDMNRDSSDIENYSETEPLITEV |
| Ga0247724_100107210 | F026798 | N/A | MDKSKEKLISHNRTEESSRSKRGNNVNIDKVLDENNQLTTIEKLALKRGIERVNRRRDSQQAKIIRMVNLLDVKQNFQDRNNQLKLQMLFNTVLKLKRVYPSKSAMWIAPSNNTLPPYKSVRLENKLLKRGLRKKCSSYPNKEKIIENWYRLMKVQESL |
| Ga0247724_100107212 | F038078 | N/A | MAAKDEKCTVEMKKLKRESIERFFSLINFIFFMSEEEDITLLRYLHEAKAKVLANSEYWSLVDYIGMTIGRMFRCIDTINVEEKWDSKSNKEWFHEMIKSMNTLKDLHPQWQLTKQDVDRYSTTCPCSQCSTEEGRKDAISSSISKLNI |
| Ga0247724_100107213 | F045533 | N/A | MAEKPEDNILSSDQRTVNEKEELVYRLLCLINLAFSQVGKRNEDYLIFQQIHETKLKITRIDPSWSFYDSNDYLINKILRYINAINSNKEWNHEDNIKLFTEVRKNMIVLKEHNAYWFIDKNSIESHNPFLCHGCRKLKEEK |
| Ga0247724_100107214 | F045559 | N/A | MDLTSKSIKQTVQASELRKDVAKENYKYVKLTGISNVINSLRDTDFSNESLMHHRMNRIHVLKWKIKDIDPNWHLTDQIALMEHQILDLLDGIDHMKPWNEVGNKLKYMALFSIIENLRKLHPRWGIHLESLETPEKNHWCKCYKCHEARMQKYKIVIQDNPET |
| Ga0247724_100107215 | F039102 | N/A | KDQEKERLIRNLFKAIDNLDSTESKETISQAATRIYHLKREIIKIDPTWRVRDPYNYYVHRVLSLLDGIDTRENPNVHNNQELYLKLFHETRMIRKTNQSWRLNVPRLVEFMTETSKVMYPDKIEPMETEEVPKPSSNN |
| Ga0247724_10010722 | F062460 | N/A | MNLEKSIIEAVTTAVREIRQEFCIEKQVKSLMKIYDAIVVKDNEISTESSLKTTRKRKRSISHE |
| Ga0247724_10010726 | F057099 | N/A | MKILRKDWELINKIAWNILNLKLENSKKTLNLGSSKDAFKLLGILNTPVFVHILISSLCRTINLIRPETSEVDIVEIANRALLIMREIKKRRPNWKFQFCPNNLANSKETLKKQKSNRKYFSKISRLKNFLIINQILSQIEVDKNYEENSHLFEALKGNKREGKNSKLKWLFYHKVPELPDLTEYR |
| Ga0247724_10010727 | F073066 | N/A | MEEDLRKIHLEDLLKTLEDSDKDKKIEICNIMKEMVKEEIQEAKRNQDNDITHFLDKLKELLEKTINRYSE |
| Ga0247724_10010728 | F085120 | N/A | MNNQARIIQLLNRLENMLKIEMEKARTDRDKDAIKLLEKLHNLIKKTEANYSAQKH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |