Scaffold Ga0233392_1028080

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0233392_1028080

Scaffold Ga0233392_1028080

Overview

Basic Information
Taxon OID	3300024241 Open in IMG/M
Scaffold ID	Ga0233392_1028080 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from Mancos shale, Colorado, United States - Mancos A_50_July_PB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	599
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Colorado
Coordinates	Lat. (^o)	38.96	Long. (^o)	-106.99	Alt. (m)		Depth (m)	50
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034869	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233392_10280801	F034869	N/A	GNTMGSSFNRYYTLQLKRKGFRDLAKLERPDYPFPPSIFVVKKDFLQTKRRVLKAMLTAVMEASERQKSSKEPSLRLIRQHLRIQNPEVVEAAYEDGVTLSYPYFTERQFQISVELLSKSMEQPVQLNYKLVVDHSVVDEISRPGMNRPN

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