Basic Information | |
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Taxon OID | 3300024246 Open in IMG/M |
Scaffold ID | Ga0247680_1000001 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 469456 |
Total Scaffold Genes | 444 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 356 (80.18%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Indiana | |||||||
Coordinates | Lat. (o) | 40.4449 | Long. (o) | -87.0297 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000512 | Metagenome / Metatranscriptome | 1064 | Y |
F000552 | Metagenome / Metatranscriptome | 1033 | Y |
F000696 | Metagenome / Metatranscriptome | 931 | Y |
F000703 | Metagenome / Metatranscriptome | 928 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0247680_1000001209 | F000552 | GGGGG | MRRKLVWVESQNFQGWGCSECAWAFKPEGLPVGQSIDEMKMHYEGQRDKEFTSHVCGEHPRGTKPPR |
Ga0247680_1000001278 | F000703 | AGTAGG | MLSHLSGHAISRPYGCCNPDRVPFMQIREYQESDLAALRAIHAAQGFDYPLPDLRNPLFVTKLILSKAHEENESHQAELQQEQIIGAALLRLTAEAYLLLDPTAGTPSERWQWLLQLHAATERDAWQRGLEDVHAWLPPPIARKFGKRIETLGWRRDDTWTPYCKRLACTARISGP |
Ga0247680_1000001285 | F000696 | AGGA | MPVVGSSAYNTAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDALLVVPAVAQTDTSLQISITDATAPPNQLPTDLLVPITIWERPSGSSDDFLEMVDLTQHGGLPSRVQDSTLSVWEWRADGIYFLGATQDTQIRLRYAKAYPDFTDATSPVLIRNAQEAVAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAIRREQQSVRRRRPFSSRSGYTPF |
Ga0247680_1000001287 | F000512 | N/A | MIRVLRETHETPENVAQSLRRAGGINRFGEANYRAVWGWNRLAWIGGKFEERDPETGSLLREVVELRQEPKYPAVNRWHIERWVPPEVYGSPRFWYAQTVERENGVSIPALGPYPSRGEYEHCFTLERPRGEFLQLTPAAADHVARAIEFSRHLPGATKRRSVNEREEREERAYEAWAYDQLDDAVPAFHKQPFVSVISK |
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