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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024246 Open in IMG/M |
| Scaffold ID | Ga0247680_1000001 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 469456 |
| Total Scaffold Genes | 444 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 356 (80.18%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Indiana | |||||||
| Coordinates | Lat. (o) | 40.4449 | Long. (o) | -87.0297 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000512 | Metagenome / Metatranscriptome | 1064 | Y |
| F000552 | Metagenome / Metatranscriptome | 1033 | Y |
| F000696 | Metagenome / Metatranscriptome | 931 | Y |
| F000703 | Metagenome / Metatranscriptome | 928 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247680_1000001209 | F000552 | GGGGG | MRRKLVWVESQNFQGWGCSECAWAFKPEGLPVGQSIDEMKMHYEGQRDKEFTSHVCGEHPRGTKPPR |
| Ga0247680_1000001278 | F000703 | AGTAGG | MLSHLSGHAISRPYGCCNPDRVPFMQIREYQESDLAALRAIHAAQGFDYPLPDLRNPLFVTKLILSKAHEENESHQAELQQEQIIGAALLRLTAEAYLLLDPTAGTPSERWQWLLQLHAATERDAWQRGLEDVHAWLPPPIARKFGKRIETLGWRRDDTWTPYCKRLACTARISGP |
| Ga0247680_1000001285 | F000696 | AGGA | MPVVGSSAYNTAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDALLVVPAVAQTDTSLQISITDATAPPNQLPTDLLVPITIWERPSGSSDDFLEMVDLTQHGGLPSRVQDSTLSVWEWRADGIYFLGATQDTQIRLRYAKAYPDFTDATSPVLIRNAQEAVAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAIRREQQSVRRRRPFSSRSGYTPF |
| Ga0247680_1000001287 | F000512 | N/A | MIRVLRETHETPENVAQSLRRAGGINRFGEANYRAVWGWNRLAWIGGKFEERDPETGSLLREVVELRQEPKYPAVNRWHIERWVPPEVYGSPRFWYAQTVERENGVSIPALGPYPSRGEYEHCFTLERPRGEFLQLTPAAADHVARAIEFSRHLPGATKRRSVNEREEREERAYEAWAYDQLDDAVPAFHKQPFVSVISK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |