NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247680_1000001

Scaffold Ga0247680_1000001


Overview

Basic Information
Taxon OID3300024246 Open in IMG/M
Scaffold IDGa0247680_1000001 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)469456
Total Scaffold Genes444 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)356 (80.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000552Metagenome / Metatranscriptome1033Y
F000696Metagenome / Metatranscriptome931Y
F000703Metagenome / Metatranscriptome928Y

Sequences

Protein IDFamilyRBSSequence
Ga0247680_1000001209F000552GGGGGMRRKLVWVESQNFQGWGCSECAWAFKPEGLPVGQSIDEMKMHYEGQRDKEFTSHVCGEHPRGTKPPR
Ga0247680_1000001278F000703AGTAGGMLSHLSGHAISRPYGCCNPDRVPFMQIREYQESDLAALRAIHAAQGFDYPLPDLRNPLFVTKLILSKAHEENESHQAELQQEQIIGAALLRLTAEAYLLLDPTAGTPSERWQWLLQLHAATERDAWQRGLEDVHAWLPPPIARKFGKRIETLGWRRDDTWTPYCKRLACTARISGP
Ga0247680_1000001285F000696AGGAMPVVGSSAYNTAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDALLVVPAVAQTDTSLQISITDATAPPNQLPTDLLVPITIWERPSGSSDDFLEMVDLTQHGGLPSRVQDSTLSVWEWRADGIYFLGATQDTQIRLRYAKAYPDFTDATSPVLIRNAQEAVAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAIRREQQSVRRRRPFSSRSGYTPF
Ga0247680_1000001287F000512N/AMIRVLRETHETPENVAQSLRRAGGINRFGEANYRAVWGWNRLAWIGGKFEERDPETGSLLREVVELRQEPKYPAVNRWHIERWVPPEVYGSPRFWYAQTVERENGVSIPALGPYPSRGEYEHCFTLERPRGEFLQLTPAAADHVARAIEFSRHLPGATKRRSVNEREEREERAYEAWAYDQLDDAVPAFHKQPFVSVISK

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