NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228675_1017329

Scaffold Ga0228675_1017329


Overview

Basic Information
Taxon OID3300024247 Open in IMG/M
Scaffold IDGa0228675_1017329 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 36D_r
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1775
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031255Metagenome / Metatranscriptome183N
F035552Metagenome172N
F050369Metagenome / Metatranscriptome145N
F077286Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0228675_10173291F050369N/AMKITERDLRNWFPADRRFLHFCAKYYGYSFHNDEVVERASHLAVLNVMRLVNRDEEFENEAHMTGIVMSSFRYAILNSYTNSLSANEKNLEVRNESEVTYGDGDDEYSKYQANAIADTKEIDNLIDVVRDYAETNLPYLQRRALMECVIGESSMKELATDTDTSVRKVHLAKQKAIRRIKKFIGVLNENEEKYGKKEADGKYVSPSRSKLQIAIQLEPIRKDETRERDYSKAMSFVNTP
Ga0228675_10173292F035552AGGAGGMKIKDDLLISADLSNLYWVLGELAEKAKEDDDLIKVLLQLEQFVETHKTRTRDMVTYRDTIERARNEYRSLKLKYDGTVEALNLKTKFLSQVMNEKMDEDVNNQF
Ga0228675_10173293F077286N/AMSKLMYTVEWEGDVANYKQDFETIEEARIAMIMHHKRNAIIKVRRMDED
Ga0228675_10173295F031255N/AKYFNEVVAELQSKGTIFGAEYRKKNGEITKINGRFGVSKFVKGTGTSNPNVLTVWDNNRKRYTSLIPDNIVRLTTNKRRYLKTDEFLIENYE
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