NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233439_10001057

Scaffold Ga0233439_10001057


Overview

Basic Information
Taxon OID3300024261 Open in IMG/M
Scaffold IDGa0233439_10001057 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)36888
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (60.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.5847Long. (o)-123.5008Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004880Metagenome / Metatranscriptome420Y
F019751Metagenome / Metatranscriptome228N
F027831Metagenome193Y
F037175Metagenome / Metatranscriptome168Y
F056357Metagenome / Metatranscriptome137Y
F090238Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0233439_1000105712F037175N/AMIKYHTKHINEQFVRQTIYHTLANLSVTDLLGWITKWDIHVWDLKETNPQFFEHVKTTSGQKINTNMPSGVTGKYRMDLWLHDSNNDFKARENSDRIMHETCHAILIGTPYFVSGVHDNVSNRFQRDFWYWNRFRWSKFTLSIIDIREFL
Ga0233439_1000105722F019751GAGVRNAASQALPSGAWYARSSRGTMTRTRGPELSKEFHDYIFNQWMFFSENAYGIAQKINKDTSLMSQFGKTTPAGVHYHIKQIEKEMEDNISEDAMDTYIGEFMRARTGFENDVTDIQILMSHEKEKGLEDMDKDLYLRLARFRHEIKLDSFKMLQDSALPLQVKKLKLEREKLRPAKAIPGVINNERSGE
Ga0233439_1000105741F090238GGAGGMRIHIDESEDAHGEYHSHDGTTEIWLGGHLTIWGLFDTLVHESLHQAIEENSDQDTTEKQDHWVIQRLCF
Ga0233439_1000105745F056357N/AMITKTLALVALLTMSVTLAHAETSTVEVPFDSHGQSCWYDDLAVEYHCTWQGVVETFTIEDLEEFRDILDETIYNEELKRLQETALAEIAEEKAILSPNEKTILAIENKLNQGIATASDSVLMNLLKELNTCRQGMDERTQHVQTAREFEISDFELWSANNVKYDGPIGKIVMAIEECQAQEHVYKLSVGYQNFDFGSKQYSLADKFTPDIQAVNYDSLVATDSGINKSLICDSNQHSQQYKKQFGCLVLYDGLDAEEIKRQNETRFGTDGKISYESQVLTDYMDFLSNYGSRQATVEDKKVQEEIALPIANEWKEDHNFYNNHKGLE
Ga0233439_1000105747F027831N/AVARGKQSGIAFGQRTKQKGQSDLEQLIMLKQFLKQRFHMDFKREWYVGFDKEYGNLYRISESVGKQELSEFKWKNPDLLCFDNQHGIIIVELDGAIHDRKVQKTIERNELFRGAGIKLVVLNIADIKEVGETIIGRLESDMMDLIHGQKI
Ga0233439_1000105754F004880GGAGMSQEFKDHADTGEEYTCDKCNDTILCAEEYDSYIKFQYHYCEPCWNYMRLKKGICTCGSSMTNRSETVETSVLCGCGKEVVLK
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