NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233439_10005047

Scaffold Ga0233439_10005047


Overview

Basic Information
Taxon OID3300024261 Open in IMG/M
Scaffold IDGa0233439_10005047 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)12446
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (77.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.5847Long. (o)-123.5008Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004418Metagenome / Metatranscriptome439Y
F007004Metagenome / Metatranscriptome360Y
F009987Metagenome / Metatranscriptome310Y
F052862Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0233439_1000504713F052862AGGAVDEQSRKSQTQILELQKDIEHLKYVVAELEKDKEFLKDHFTLKNSQRIEDIEKIHNRMDKHIQTELSYHQGVRDKATTEHSAIHKRIGQAERWIWIFFGGITVLSALLGKASFSSLFGG
Ga0233439_1000504714F007004GGAMKNVMIGFCLVALIGCGTSNAYERPSVRIVGEAQMTKLPNGNYEVTPRWIKDRFNAENSMVKQLEDCREGG
Ga0233439_1000504715F009987GGAGMLGLIGNALGLGIKIMDKIEKNSDKASFEEFKARKKDMDKSLGDTDVEGIDSMFEYLADRARGGKTGRKG
Ga0233439_100050472F004418AGGMKTLKSFKSWIVADWKYNRFRLFCETIGSLCFILIYLLMAWYGDDVCITTIFLIQLLGSTLHIVNAYLRNSVNLILLNSIVIIIAIFGLAKMHL
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