NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210003_1039202

Scaffold Ga0210003_1039202


Overview

Basic Information
Taxon OID3300024262 Open in IMG/M
Scaffold IDGa0210003_1039202 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2537
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.622Long. (o)18.254Alt. (m)Depth (m)437
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007550Metagenome / Metatranscriptome349Y
F047104Metagenome / Metatranscriptome150Y
F091857Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0210003_10392022F091857AGTAGMKKIISLVGAICLSGCVVTEKEVVYKKISFADKKGVTTLYYPPKWQKFLKPIDDGTPKTMLVRFGETLNAQTE
Ga0210003_10392025F007550GAGGMKKIISLLLLVGAVSTNAASLELKVMQQKTLPNGNAYGLESGIYFELTDLEPFIMYKLQYSEDLDKWTDLVHLGTYKMAMTSPYWTWKELPPYQCFFRIVVAW
Ga0210003_10392027F047104GAGGMTITEIRRYAADKRKRQAKRDTFTLNGNTYTVSNDPKHQADQLAGYQGRNPK
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