Scaffold Ga0233444

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0233444_10021471

Overview

Basic Information
Taxon OID	3300024264 Open in IMG/M
Scaffold ID	Ga0233444_10021471 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Restricted
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components
Scaffold Length (bps)	4561
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location Name	Canada: British Columbia
Coordinates	Lat. (^o)	48.5847	Long. (^o)	-123.5008	Alt. (m)	Depth (m)	10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070567	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233444_100214711	F070567	N/A	KPFELGSWNPEGTRVQETDFSAPEPDNIIARIYPKPGKTVLFPCFMVHRIQPLVDNYRWAFVDFIDTPNYSTKTKADLTSIFKRYFDEHTRSKLLSSR

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