NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228661_1035035

Scaffold Ga0228661_1035035


Overview

Basic Information
Taxon OID3300024266 Open in IMG/M
Scaffold IDGa0228661_1035035 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 75D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)917
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008104Metagenome / Metatranscriptome339Y
F016593Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0228661_10350351F008104N/AMGLLSNISEFFASNTYVQATEHSIATNELENSIEDLNGRYRLGHTLVGDYIKFGVNDDFPVIIEKMLRQSPVHSGILTKKAKMVVGNDIDYSDEFAKTNKAKAELKAFVNHCGGNNKGLYEVLTHAAFQYEHKGALAFYVRWNKGRTKILEFKSLDPKGVRVGEPNEKGEVTHYIVRRSFGYGSNSVQHNEP
Ga0228661_10350352F016593N/AKTGVVNTLSFVKLSSFTVNSFDVTLDKVVGTGSLTITNLTDLNNLDSCKDFIQINIDLLSNDLEGGEYELTITNSGESYKYLTEVQDYTVTQTGTGIYGSTVRFTDL
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