NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228661_1047955

Scaffold Ga0228661_1047955


Overview

Basic Information
Taxon OID3300024266 Open in IMG/M
Scaffold IDGa0228661_1047955 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 75D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)788
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026261Metagenome / Metatranscriptome198Y
F044950Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0228661_10479551F044950N/AIDFQNRRIFLKWHSKSCNQIMYAENKSWPQGEWRDQIKDIILDQYNEGIYKLTMYPHCHYIDSQGQMRAIDWYGCVPIDAPYIAEKYMQGIIHETAQFRLEETGKAVDSVLNLETMFKRSLSTHVLWGDQDMSYIYKQIFK
Ga0228661_10479552F026261AGGALAKLIGTTDGIIDWDPIVDLCAKCTTGDYNSVKSVVERSEGNWRENPELLGSYHDVINTWDQAGYNLEEIEWWDYYPDTHFDIDIQNKFAKIIDAEPLRVFVSDVRPGTNAPYHWD
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Institute for Fundamental Biomedical Research
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