NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257091_10257367

Scaffold Ga0257091_10257367


Overview

Basic Information
Taxon OID3300024270 Open in IMG/M
Scaffold IDGa0257091_10257367 Open in IMG/M
Source Dataset NameGoat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 1 Spades (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2168
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Selenomonas → Selenomonas artemidis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.4204Long. (o)-119.6671Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067282Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0257091_102573671F067282GGAMLDVISLQTPQWKWASSRLEGRTFWIFSSCGRCSRLTTGTSGTRSGGLRKGQSPCEMLGGLSGFLSRRSRGLRPCVESVPEPEDSSPVLTWILGYFWSLPRGVSPRLEWGHAGALSSRAVTAVSRFPWRGSRDLGLSLEAFPRGFPTRLSHRAVPRATLVCVDPRLESRGSAGKTVSLEWTETSAGLWEY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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