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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024282 Open in IMG/M |
| Scaffold ID | Ga0255217_1000092 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepB_8d |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32250 |
| Total Scaffold Genes | 54 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (29.63%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Louisiana | |||||||
| Coordinates | Lat. (o) | 29.8571 | Long. (o) | -89.9778 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009717 | Metagenome / Metatranscriptome | 314 | Y |
| F015086 | Metagenome / Metatranscriptome | 257 | N |
| F045073 | Metagenome / Metatranscriptome | 153 | N |
| F051094 | Metagenome | 144 | Y |
| F051899 | Metagenome / Metatranscriptome | 143 | N |
| F065237 | Metagenome / Metatranscriptome | 128 | Y |
| F095413 | Metagenome | 105 | N |
| F101076 | Metagenome / Metatranscriptome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0255217_100009213 | F015086 | N/A | MTLNQIIAKIKTAAESHKMVGKFAVGAEFDFAVDEVKYYPLVWLVPNGFDFNTSGKLVSYRFAMMVMDRQFESSSNTIEVLSDTAGVLIDIVTLLIRNNRLDEDFEMVVNSTAEPFYDASTDVVAGHAIDFVVNTPYLESYCDIPT |
| Ga0255217_100009214 | F051899 | N/A | MTRSFCIFLTALLMFVPQKASCQFTDSLIREVNYRLWQGAKAREQVILLQKEIQIDSAIIHEQDVVIEKLDKENIQLRTDNKVLTHSIKQYKRISGGLALLVILLII |
| Ga0255217_100009226 | F095413 | N/A | MIPAILIIPVTIAILAISYLKFIIKKGIDSYDVPHQPIPERDKPIPQFNEWQNHLKTERKKLYRGKAL |
| Ga0255217_100009240 | F101076 | GGA | MKISQIQELASLKDLNPIEQMAHEVSICLNIPFSDVEIWTMDKLQTEHKKLKLDHLPDKRIGYKFSHKGRRFRLVRNAKEMSAHHFIELQEVVKGDMIESLHQVIALLSYRVDWFGRKIEDDYQWKVDNFKDLEAEQFYGYALFFSALFPRLLATTLTYLKAENKEVREMFLDGSLS |
| Ga0255217_100009241 | F065237 | N/A | LAGGRRAEWDAILKMPLIEFLNTLSFHRTITKQRNKRLEQAASKGFESYVCACLNEML |
| Ga0255217_10000926 | F009717 | N/A | MYIKINTTVNLSSGLAIPSGAVVTIAEGYAAIKDQKEGVIPAQVATFVYASEAAYTQGLEPVSGVADFNPVFSGLELSVSDYASKTAEALLVDAVKGALIAIYGESNIQIVG |
| Ga0255217_10000927 | F045073 | N/A | MKLPVSFSEFSKDPSKALTYLMIFAVIFLYLRMEGQDNSINNGCEDRLTKCENKLDQMSVMLKTQDSLSASLRSELNTYKNLGIIK |
| Ga0255217_10000928 | F051094 | GGA | MKYLILTALLAVTATPRLETADPYKKYDWVLDHAQTNIELTKASISEAKAMTETKVQEIQESVSEAKEMAKKVELLERVCEVYSVPVPESMEEFEYERKADSIRVNNMKKLNELGNR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |