NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1000007

Scaffold Ga0255147_1000007


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000007 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)252928
Total Scaffold Genes307 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)216 (70.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002434Metagenome / Metatranscriptome559Y
F015463Metagenome / Metatranscriptome254Y
F025012Metagenome / Metatranscriptome203Y
F063400Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_1000007130F063400GGAMTKKDKPIPPAQFALNRTQVEKLSKMAAHFKEVEWFTLEESHSSGIGPTVVVKFNLFNDNDKDNDTTVDITDVSTW
Ga0255147_1000007185F002434N/AMSTDTHDRLIKAFQEYFKWQDKFEYGTSDAAGIKARYWLSEIRNEASVRRVEIQNKRQNRKESRKGKLGRPPKITK
Ga0255147_1000007289F015463N/AMKDTNFYLKWIACAITLAGALCTSLRIDPLNIYLLNSGALLYLIWSLRIREWNLVAINGGLLVIYVVGLFFG
Ga0255147_1000007300F025012AGGAGMEQQAREYFVRRLNEIAEEKVNSLAVALFGPSGRPQQPTWGMVFEGIRTGEITLKADKVDYTGPYLNPQDVEWPAMEAKKAELEDYRKLVAREKQAAMDACMLDAGAQEALNKFAQI
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