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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024289 Open in IMG/M |
| Scaffold ID | Ga0255147_1000012 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 162364 |
| Total Scaffold Genes | 206 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 108 (52.43%) |
| Novel Protein Genes | 14 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (35.71%) |
| Associated Families | 14 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.4271 | Long. (o) | -81.6053 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000860 | Metagenome / Metatranscriptome | 857 | Y |
| F010681 | Metagenome / Metatranscriptome | 300 | Y |
| F011752 | Metagenome / Metatranscriptome | 287 | Y |
| F016639 | Metagenome / Metatranscriptome | 245 | Y |
| F017641 | Metagenome / Metatranscriptome | 239 | Y |
| F022640 | Metagenome / Metatranscriptome | 213 | Y |
| F024290 | Metagenome / Metatranscriptome | 206 | Y |
| F048809 | Metagenome / Metatranscriptome | 147 | Y |
| F049578 | Metagenome / Metatranscriptome | 146 | Y |
| F055691 | Metagenome / Metatranscriptome | 138 | Y |
| F058109 | Metagenome | 135 | Y |
| F085647 | Metagenome / Metatranscriptome | 111 | Y |
| F087139 | Metagenome / Metatranscriptome | 110 | Y |
| F090331 | Metagenome / Metatranscriptome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0255147_100001213 | F024290 | N/A | MTLEEILEEYGQEVLDTYYELFPDKSISKFPDRFCGFVGEYSDFVLDCYYSTGSDELEPIEHFENGVFQEYYYYDEKTSTGFVFYNER |
| Ga0255147_1000012200 | F000860 | GGA | MLPKILSQDSNYDEWCEQEILNAYKEAAECDEFMFGDYDFCKEWLGENT |
| Ga0255147_1000012203 | F011752 | AGGA | MNATTEDIVAHVRSWSLDRAADMSIPKEDARAILAEFYEWIEPEDDELEIVSLEPEDY |
| Ga0255147_100001228 | F010681 | GGA | MKMRLNPNQQFWANIFRCAVERSNIYFNEKDLDRHAREHTTVVLALQKGEQFWKELL |
| Ga0255147_100001229 | F048809 | GGA | MIRKFIEWFFTSTEIFVEDDVYSKLLELELRIEALEAESVENSNCFYELSNSIDAVDARIDILTLENWNKNDV |
| Ga0255147_100001239 | F090331 | N/A | MSIVLGVAIYAALVAFVSSIMLYYLKVMYSREEAKLKEKSK |
| Ga0255147_100001251 | F085647 | N/A | MLWQDRNGNWFSTVSPIDMKIERAMIEANANKVWEEKERSGDWLFDEMFGG |
| Ga0255147_100001263 | F017641 | AGGA | VSDSYLDPLKCTYSMSTTTEMDQVFHYVTNWKEGKVMQMFIQQITPEYQECDHKYVAIALNPVTNKSMVMSNPRSHYDTLQWVRKFCGSFSLLY |
| Ga0255147_100001268 | F022640 | N/A | MRIAFLIATIALGFKVAIPAYATVNEYQERQADQFCQIDPNYCK |
| Ga0255147_100001273 | F055691 | N/A | MSTYTSPLTSKVYEIVKTSHTRNAWDSEGNLTPYVQSVFDIYHEGKKVQFALTAEGVAESVAHLENPGRDVSSRFD |
| Ga0255147_100001274 | F058109 | N/A | MIETDFYILSEEQFAQFSQLAEEINVSIDYYLCEFCDVSGPLIEV |
| Ga0255147_100001278 | F087139 | N/A | MLLSKQSFNNQQVLPFIVKKEDEYTEEGSYSLHLFSRIVITKEGKKYRYLPLRFEGEEARFRKRSDAEDYARYRLALD |
| Ga0255147_100001281 | F049578 | N/A | MRTLKYKHLGDMRIIRVAQITTDILPQLQEVMQQLEENGEDSREVILRVLSDIEDRLGN |
| Ga0255147_100001284 | F016639 | N/A | MSKQVLLSLLAQGNNGSEILSILDAIVADNVAGFDYIESPQLESALGIPTLEEIAF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |