NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1000026

Scaffold Ga0255147_1000026


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000026 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)99109
Total Scaffold Genes161 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)101 (62.73%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Associated Families11

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001881Metagenome / Metatranscriptome622Y
F002226Metagenome / Metatranscriptome580Y
F008358Metagenome / Metatranscriptome334Y
F008943Metagenome / Metatranscriptome325Y
F009329Metagenome / Metatranscriptome319Y
F010764Metagenome / Metatranscriptome299Y
F012110Metagenome / Metatranscriptome283Y
F066719Metagenome / Metatranscriptome126Y
F071163Metagenome / Metatranscriptome122N
F074802Metagenome / Metatranscriptome119N
F074911Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0255147_100002612F008943GGAGGMKFDGIDWAVLFVFFIAIVAGAIITYDAQQQRVLFQQTYNKNLECRQALKDQTVVRVNEICGEVPVIGDFVK
Ga0255147_100002616F001881N/AMTERAQEFMNEVWEHRNNFGADTEEKLVSAILCLAAEKVQFFTAQDGRIVLDKGDMIRLAEELNQ
Ga0255147_100002621F008358GAGMSSYTFWLIIFAFVLYFIATDQSVARAFYMLTQLARVQYEKTKWWILHNPANPIVKYFMWRRAYKLAKELQQELKSRNK
Ga0255147_100002623F066719AGGAGMVVFLTATIITCSDALSVIQRISKVVGLTEVQRTEIIQEIRKVIPSCPVKVVKQ
Ga0255147_100002638F002226GAGMSLISQQDRQMVIEALEYYVQKLKEDNCTPASISAFQTLLNWVELEHFKHEN
Ga0255147_10000264F074802GAGMTKCTCSYIQIGTKTSNSKNLNPDCPLHGTDSVWYNSPEQVNKRKDRSQRLRELYDAARKARENVK
Ga0255147_10000266F074911AGGAGMILDEEVIKLVKEHFEEDWDENDGWEYSGNFDAFVKFAQEIFQMGYNEGSYDMSYYE
Ga0255147_10000267F071163GGAMTKTQSALERVIIELDSWCDNWTPTSYNDPRISLRQIADRARDVLEQEKNDYDFR
Ga0255147_100002675F012110N/AMTKALLLLAWVPFLFVSAPQASSIQQVAVSCDTAMELMDIVKNDDVVIQKIEDRLLLELRKDFIVKC
Ga0255147_100002688F009329AGGAGMTPYELRFEIFKQAYNMLNDQFSMEYDTAVRWNEDENKKVAMDYPEFPTLNQVLEQAEIINDFVSSK
Ga0255147_10000269F010764AGGAGMIEIKKSYVLELTEQQAKELYWILRDVNLETDNTLKLVYHELKKLFDAGIR
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