Basic Information | |
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Taxon OID | 3300024289 Open in IMG/M |
Scaffold ID | Ga0255147_1000032 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 86447 |
Total Scaffold Genes | 117 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 62 (52.99%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 31.4271 | Long. (o) | -81.6053 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003783 | Metagenome / Metatranscriptome | 468 | Y |
F010017 | Metagenome / Metatranscriptome | 309 | Y |
F012110 | Metagenome / Metatranscriptome | 283 | Y |
F023097 | Metagenome / Metatranscriptome | 211 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0255147_100003212 | F010017 | GGA | MNHRKKKQAENQKKKRMYTPEGYLSDPPDSKCPYCGKDNTSCSYVNSLSRAWARDACKRKNTTKKSH |
Ga0255147_100003219 | F012110 | N/A | MAKALLLLAWVPFLSFSTSQLTATEYAVKLSCDTVWELMDIVKNDDVVNQRTEDRLLLELRKDFIQKC |
Ga0255147_100003225 | F023097 | N/A | MKSYCIKDTLTGHVFKILMTKEEFQGFLKENPDMDECINCVECDDAPSICIE |
Ga0255147_10000329 | F003783 | N/A | MKRLFLLSIIIFSFIPIKSQNKTLSNYGVKDRTITPTVISKVVSNVPVTREFAYRKLETLIPYIKVSSKQFNIPENVISAILYEEIIHRKPVDLKTFGVAQLGINELVIQGLPPKKELLDDDEVTVWLLSSKLRRLQNQTGSLKDAIILHNGYYDYYESVKKSAKDPKILMLLSQQRKSNFILV |
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