NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1000032

Scaffold Ga0255147_1000032


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000032 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)86447
Total Scaffold Genes117 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (52.99%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003783Metagenome / Metatranscriptome468Y
F010017Metagenome / Metatranscriptome309Y
F012110Metagenome / Metatranscriptome283Y
F023097Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_100003212F010017GGAMNHRKKKQAENQKKKRMYTPEGYLSDPPDSKCPYCGKDNTSCSYVNSLSRAWARDACKRKNTTKKSH
Ga0255147_100003219F012110N/AMAKALLLLAWVPFLSFSTSQLTATEYAVKLSCDTVWELMDIVKNDDVVNQRTEDRLLLELRKDFIQKC
Ga0255147_100003225F023097N/AMKSYCIKDTLTGHVFKILMTKEEFQGFLKENPDMDECINCVECDDAPSICIE
Ga0255147_10000329F003783N/AMKRLFLLSIIIFSFIPIKSQNKTLSNYGVKDRTITPTVISKVVSNVPVTREFAYRKLETLIPYIKVSSKQFNIPENVISAILYEEIIHRKPVDLKTFGVAQLGINELVIQGLPPKKELLDDDEVTVWLLSSKLRRLQNQTGSLKDAIILHNGYYDYYESVKKSAKDPKILMLLSQQRKSNFILV
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