NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1000118

Scaffold Ga0255147_1000118


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000118 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33490
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (89.58%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018705Metagenome / Metatranscriptome233Y
F019800Metagenome / Metatranscriptome227Y
F046898Metagenome / Metatranscriptome150Y
F088805Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_100011822F088805AGGMSLSDHQIFMLKHLAMGWRFRLYNDKPGSWNTYWSLRRRKLVTAGSVVTEQGRKVLAKELQQQAARQAKREARHERPA
Ga0255147_100011829F018705N/AMDTPTPKLKPFLMRLHPHTRQLLDKAAADQHRSVSSLIDQCVRDQLSPRYGELQPRLQRFLSGVRQP
Ga0255147_100011834F046898AGGAGMPAHNPAAGRDMRERQLDIFEQRDHQFLERCRALAVLVCKQQGQVSINDIRAYIEVPPGVHPSVLGAVFRTKQFKRVGYTEAAHPQAHARVVRVYSLATNKE
Ga0255147_10001187F019800GAGGMSWEEIEAIGQATDIREVEQKREDLAKLTLRVFGSEDGQKLLHWLKDMYVNVPIAVPGTDPSHAYFAEGQRTVVRDIEVRINTARKL
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