NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0255147_1000176

Scaffold Ga0255147_1000176


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000176 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25247
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (50.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008402Metagenome / Metatranscriptome334Y
F008943Metagenome / Metatranscriptome325Y
F013514Metagenome / Metatranscriptome270Y
F019061Metagenome / Metatranscriptome232Y
F027061Metagenome / Metatranscriptome196N
F048267Metagenome / Metatranscriptome148Y
F072285Metagenome / Metatranscriptome121Y
F091921Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_100017659F027061GAGMTTRALQILECTMELSMRPKSKDRQKLIARVINEVADRLCTDCGELEDPIEILREIADEVEAL
Ga0255147_100017669F019061N/AMLTQVFEMTEPTDTEILEFLLNQFQAHNLKMNGESDWVFMNGGSRMNHLKGKTVRNAVIAAMRAK
Ga0255147_100017671F048267N/AMTDEEWETSLKSMNEYAKKWVDEEIDKIKYNIIKDIINGELNEKL
Ga0255147_100017672F008943GGAGMRNFDGIDWAVLSVFFIMIVAAGVITYDAQQQRTLFQQTYNKNLECRQALKDQTVGRVNEICGDVPAIGAFVK
Ga0255147_100017677F091921GGAMIEMRVVLHENRINPEIQYRFMLFSMGQGGYLCPPNPDMKWSEWRTCPYVKYEEIEA
Ga0255147_100017680F072285GGAMKYPQSVNKSIFIREVYEDTYKTPYDYIVDTMIWENRVDELHTIWCKGKEPRKVEK
Ga0255147_100017683F013514GAGGMSINLEELQKYLDDNNITFEEYMRANMITDEERKYIDKVWMNAIYKNLGEDT
Ga0255147_100017684F008402AGGAMAIEITNQVRIQEHTDYWYTVEDTHLDVGFEGCTISYWELPSGVNTSEKRVNHICMEKEEALAIADAIYKLFKN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.