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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024289 Open in IMG/M |
| Scaffold ID | Ga0255147_1000183 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 24516 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (79.31%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.4271 | Long. (o) | -81.6053 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000857 | Metagenome / Metatranscriptome | 858 | Y |
| F001059 | Metagenome / Metatranscriptome | 790 | Y |
| F004695 | Metagenome | 427 | Y |
| F005087 | Metagenome / Metatranscriptome | 412 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0255147_100018318 | F005087 | GAGG | MVPYLQSANSLVSRIAQWVGSIPQSIGINASSFDSNTKVITTSSNPTSAVIAGDFIGPNLMGPYTLVLSVTSTTITVSDPDGVWTDLTYPTAILSLPRSDTMQILASVQLAELKMRTLEIPALRSDPYDDAYPSTLLTDANGFAPIPADMNWPILFFQETPNSQVQPGTPAASYGPWIIYDRVGDREIIRRRMIDQLYVRPFGVPRVIRASFSEVGQKYVFTPNPGEGCVIKAYYQKTFPFLLGITGDALEPVVQTNAVLNSFPEGYFYGTLWAYYDKNKNLEESQKWLGRFDDSYGLIEDQNYKDKWRGGDQHLTSEWQPRDYRYNFK |
| Ga0255147_100018319 | F000857 | AGGAG | MELNLNNEEAKVNEDYYLKGNLEAGVEGVLRKNDKLYNEVKSGTWSQTFDTANISYKIGAQDGVRYIQFDQKNVESIRQDCKNMREFYKQHGTDNPFFAGTFHAMNLPKCFAHEISSKWFDNRPWELIKKDKKDKILFYAIVNEYYSDFVCHPSGKIPLPYNPIIPTK |
| Ga0255147_100018323 | F004695 | AGGA | MLDKQNIVVDSLESPPQNKGIEYKVAHEVYLKMVDYLRLTQAKNTLNRMSAYQYLQVQVANSTEAIRGIDYIHPVVTPGVDYATAVITKCLMPSGKVDFMFDRFSEKDDLQARQATEMVKYMLNSKNDSYQVIRDWAQGALLNKNGIVMISPIREPITQYKEVEGTKDQLRAFEIMAADKGLTAKRQNMRKIDVNLEGVAQEMAMDDSPEMVADSINANSIYRAKYKLTGYSTTVRIKQVAQHYFVCNPTISTIQDQDFVGFYDPMTIHEAKAQFPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVVMLTTAWIRRDVDGDGEEEIIEVCFSGSYILYIKEVDFIPLANMCPKPLVGNFFGYSLAERLIPMQEYATAIARAEMAFAMQASTPRIGVNPEFMDAEEIQRGVSAMFILDRKFDPTKHVFEFQPMQGNLGYVESSMARFEKDTMAMIGMTSPGDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLREAIYIIWKTLIQYSDDYNIQQLAAVCGEGQPFLDALSMENYEFIDRKQISIDLALGFLSDENRLTRQQLIMQTQQQFAAMVGQLDPSVPELFYKVRRPFEDTLRVLGVRDVDSYLPTLEEAAKIIQSMAQKPPSPEQAKMQAQAKEQETKAVLNQANTELALKKAQDIDTDNMFEAMAAKAGKLKAVQVD |
| Ga0255147_100018326 | F001059 | AGG | MATYDIEALKADLPSAKELAQFVYDRTQIALDLIGKPKDEQYQVAKNALEGKKVPSEYLTVENPYVDKKELVPEDPIPTLPPRSPDLPSREAQIHFFGATNMPHPLDPQSDRRVAIDFRKYENGVITFQVMGPLEKVAVGERLNKYGQKQPEKYTWLDPRTPEQVVRNADGTFTSLGRGLYTYCVGEKGAGIWPLIDRDIVKANQANIANPWA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |